A pipeline and tutorial to analyze metabarcoding data using pears and fastx-collapser with a limited local reference database. It is intended to be an analysis guide for students working on their own ...
Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Phytoplankton are used worldwide to monitor the environmental status of aquatic ...
The "ASV_table" which includes all the numbers of reads of each ASVs in every samples The "Taxonomy_table" which includes all taxonomic information of each ASVs (usually levels such as Phylum, Class, ...
A subset of artificial intelligence (AI) known as "machine learning" (ML) allows computer systems to learn from experience and advance without explicit programming. Environmental DNA (eDNA) ...
The metabarcoding methods for studying the diversity of freshwater microalgae and routine biomonitoring are actively used in modern research. A lot of experience has been accumulated already, and many ...
A new study published in PeerJ Life & Environment and featured in the International Association for Biological Oceanography Hub evaluates the use of DNA metabarcoding to identify fish eggs. The study ...
Locations of 59 lakes sampled for sedimentary DNA analysis, overlaid on a vegetation map of the Tibetan Plateau. Ⅰ, needleleaf forest; Ⅱ, needleleaf and broadleaf mixed forest; Ⅲ, broadleaf forest; Ⅳ, ...
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