All scripts, data, and metadata files for this section are hosted on the teaching cluster in the following file path: /work/mars8180/instructor_data/metabarcoding-16S ...
The ongoing decline in pollinators and increasing concerns about pollination services require a better understanding of complex pollination networks, particularly their response to global climate ...
Against the accelerating pace of worldwide species extinction, reliable biodiversity assessments are critical, both as baselines and to track potential declines. DNA metabarcoding techniques allow for ...
High-throughput DNA sequencing methods are revolutionizing our ability to census communities, but most analyses have focused on microbes. Using an environmental DNA sequencing approach based on ...
Ichthyoplankton monitoring is crucial for stock assessments, offering insights into spawning grounds, stock size, seasons, recruitment, and changes in regional ichthyofauna. This study evaluates the ...
1 Agriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Freshwater Aquaculture Genetic and Breeding of Zhejiang Province, Zhejiang Research Center of East China Sea ...
The following information was supplied regarding data availability: Scripts are available as Supplemental Files, and the metabarcoding pipeline is available at GitHub ...
Environmental DNA (eDNA) is becoming an increasingly important tool in diverse scientific fields from ecological biomonitoring to wastewater surveillance of viruses. The fundamental challenge in eDNA ...
This repository contains the code for pre-processing metabarcoding data with OBITools v.1.2.12 on Brown's high-performance cluster (HPC), OSCAR via an RStudio Server. The code could be adapted to run ...
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